Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs66887806 | chr11:93568564 | G/A | 5.75E-7 | 212 | 9.1 | 9.07 | 3.3 | KM Plot |
| BLCA | rs67226605 | chr18:5280093 | G/A | 7.19E-7 | 214 | 9.03 | 13.03 | 4.85 | KM Plot |
| BLCA | rs6725932 | chr2:209221580 | A/G | 1.39E-9 | 216 | 2.7 | 10.62 | 9.1 | KM Plot |
| BLCA | rs673147 | chr11:65060427 | G/A | 8.39E-14 | 213 | 9.05 | 12.7 | 2.17 | KM Plot |
| BLCA | rs67396680 | chr18:5240996 | C/T | 3.99E-5 | 210 | 9.1 | 12.57 | 3.48 | KM Plot |
| BLCA | rs676114 | chr11:65076918 | C/T | 3.8E-14 | 213 | 9.03 | 13.03 | 2.17 | KM Plot |
| BLCA | rs676573 | chr11:65026462 | T/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs677740 | chr11:65039393 | A/G | 3.64E-5 | 211 | 0.5 | 8.2 | 9.78 | KM Plot |
| BLCA | rs67820965 | chr18:5271508 | C/T | 7.98E-10 | 214 | 9.05 | 12.82 | 4.85 | KM Plot |
| BLCA | rs67860080 | chr18:5265848 | G/A | 8.6E-10 | 212 | 8.7 | 13.33 | 4.85 | KM Plot |
| BLCA | rs68106044 | chr1:103138397 | AT/A | 0 | 213 | 8.87 | 15.17 | 2.07 | KM Plot |
| BLCA | rs68113757 | chr18:5240850 | A/G | 3.99E-5 | 210 | 9.1 | 12.57 | 3.48 | KM Plot |
| BLCA | rs692885 | chr15:50049426 | A/C | 2.16E-8 | 216 | 9.47 | 10.08 | 2.97 | KM Plot |
| BLCA | rs694874 | chr1:208039585 | A/G | 1.86E-5 | 216 | 3.3 | 9.03 | 9.97 | KM Plot |
| BLCA | rs7007194 | chr8:50761137 | A/T | 2.43E-5 | 216 | 10.53 | 9.05 | 1.87 | KM Plot |